When adding plugins and testing changes locally, it would be nice if we had a simple way to upload the changes to a live edition, without resorting to Git, hosting, FTP, etc. One way (which I've just tested and works) would be to add an option to upload the user directory (I uploaded it via SCP, chowned the folder, and it worked). This preserves logs (and thus, stats) but transfers all plugin installations, custom templates and themes, and more - plus it's zero downtime.
How do you upload local changes to the live version?